Publications

(2021). Rapid evolutionary changes in gene expression in response to climate fluctuations. Molecular ecology.

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(2021). Nicotine Stimulates Peristalsis in N. Vectensis: From Behavior to Nicotinic Receptor Genes.

(2021). Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population. BMC Ecology and Evolution.

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(2020). Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature methods.

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(2019). Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval. New Phytologist.

(2019). What makes a kinase promiscuous for inhibitors?. Cell chemical biology.

(2016). Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. Molecular Ecology.

(2016). Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis. The Plant Journal.

(2014). Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Systematic biology.

(2014). Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular biology and evolution.

(2013). Phylogenomics and coalescent analyses resolve extant seed plant relationships. PLoS One.

(2013). Massive mitochondrial gene transfer in a parasitic flowering plant clade. PLoS Genet.

(2013). Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast. PloS one.

(2012). Nonlinear fitness consequences of variation in expression level of a eukaryotic gene. Molecular biology and evolution.

(2012). Horizontal transfer of expressed genes in a parasitic flowering plant. BMC genomics.

(2012). Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. PloS one.

(2009). Sulfate activation enzymes: phylogeny and association with pyrophosphatase. Journal of molecular evolution.

(2009). Common fragile sites are characterized by histone hypoacetylation. Human molecular genetics.

(2008). Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC biology.

(2006). The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences.

(2005). Systematics-Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes. International Journal of Plant Sciences-Botanical Gazette.

(2004). Viruses and the tree of life. Assembling the tree of life.

(2004). Interaction of human HSP22 (HSPB8) with other small heat shock proteins. Journal of biological chemistry.

(2003). The sperm outer dense fiber protein is the 10th member of the superfamily of mammalian small stress proteins. Cell stress & chaperones.

(2003). SARS associated coronavirus has a recombinant polymerase and coronaviruses have a history of host-shifting. Infection, Genetics and Evolution.

(2003). Retroids in archaea: phylogeny and lateral origins. Molecular biology and evolution.

(2003). Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome. Molecular Phylogenetics and Evolution.

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(2003). Differential rates of evolution for the ZFY-related zinc finger genes, Zfy, Zfx, and Zfa in the mouse genus Mus. Molecular biology and evolution.

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(2002). rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. Journal of Molecular Evolution.

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(2001). Isolation and characterization of a zebrafish homologue of the cone rod homeobox gene. Investigative ophthalmology & visual science.

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(2001). Distribution of DHPS mutations among ITS subtypes of P. carinii f. sp. hominis. Blackwell Publishing Ltd.